Understanding cobalt’s human cost

While driving an electric car has fewer environmental impacts than gasoline-powered cars, the production of the parts necessary for these green technologies can have dire effects on human well-being.

After studying the impacts of mining cobalt — a common ingredient in lithium-ion batteries — on communities in Africa’s Democratic Republic of the Congo (DRC), an interdisciplinary team of researchers led by Northwestern University is calling for more data into how emerging technologies affect human health and livelihoods.

Such data can inform policymakers, industry leaders and consumers to make more socially and ethically responsible decisions when developing, funding and using green technologies.

The case study and perspective paper will be published on Dec. 17 in the journal One Earth.

“We have the framework and tools available to compare the environmental costs of automobiles that run on fossil fuels to battery-powered vehicles,” said Northwestern’s Jennifer Dunn, who led the study. “I can tell you the greenhouse gas emissions per mile for either one. But when it comes to the social effects, we don’t have the same capability for direct comparison. For many engineers, it’s easier to measure or calculate environmental effects than to understand the social conditions in a faraway country that they have never set foot in.”

Dunn is an associate professor of chemical and biological engineering at Northwestern’s McCormick School of Engineering and associate director of the Center for Engineering Sustainability and Resilience. To conduct the case study, Dunn led an interdisciplinary team of engineers, anthropologists and public health experts.

Environmental vs. human costs

For years, researchers have been conducting environmental life cycle assessments (E-LCA), in which they comprehensively and systematically calculate the environmental impacts of a product all the way from the extraction of raw materials required to make it to its use and ultimate disposal. More recently, researchers have attempted to develop similar frameworks to evaluate social life cycle assessments (S-LCA), which can be used to understand how emerging technologies affect human health and well-being.

To identify barriers to and opportunities for collecting better data for S-LCA, the researchers conducted exploratory field work in cobalt mining communities in the Lualaba Province, DRC. The team collected qualitative data through in-depth interviews and focus-group discussions with miners and other community members. Paper co-author Gabriel Bamana, an anthropologist on faculty at Normandale Community College in Minnesota, is native Congolese and therefore could provide significant cultural and historical context for the study.

“For this type of work, it’s important to work across fields in order to be informed,” said Sera Young, study co-author and associate professor of anthropology at Northwestern’s Weinberg College of Arts and Sciences. “It might be difficult for engineers who are developing the technologies to understand the social effects. By working together, we can form a whole picture of the consequences of resource extraction.”

Unintended consequences of decarbonization

What Dunn and Young discovered was deeply troubling. They found cobalt mining was associated with increases in violence, substance abuse, food and water insecurity, and physical and mental health challenges. Community members reported losing communal land, farmland and homes, which miners literally dug up in order to extract cobalt. Without farmland, Congolese people were sometimes forced to cross international borders into Zambia just to purchase food.

“You might think of mining as just digging something up,” Young said. “But they are not digging on vacant land. Homelands are dug up. People are literally digging holes in their living room floors. The repercussions of mining can touch almost every aspect of life.”

Waste generated from mining cobalt and other metals can pollute water, air and soil, leading to decreased crop yields, contaminated food and water, and respiratory and reproductive health issues. Miners reported that working conditions were unsafe, unfair and stressful. Several workers noted that they feared mineshaft collapses.

As industry leaders move toward decarbonization to slow, stop or even reverse human-caused climate change, technologies are increasingly relying on batteries instead of fossil fuels. Unfortunately, the effects of these technologies on social well-being are understudied and data related to these effects are insufficient for use in policy-making decisions.

“If we’re trying to be do-gooders by caring for the environment, then the environment shouldn’t be limited to only the natural environment — but also the human environment,” said Young, who studies water insecurityacross a range of global contexts.

Offering new solutions

Throughout their work, Dunn, Young and their team found little in the way of established guidance on best practices for conducting S-LCA, including little guidance on how to conduct interviews and a lack of consensus on how to use and analyze data from stakeholders.

“Most of this work has been conceptualized by natural scientists who have limited knowledge about social impacts,” Dunn said. “Measuring environmental effects of a technology is sometimes as simple as adding a sensor to measure emissions. But trying to measure intangible social effects like mental health is much harder.”

“And things that aren’t measured remain invisible,” Young added.

Because the quality of the social impact assessment relies on the quality of the data, the researchers identified five categories of data sources, which can be leveraged to better understand localized effects of mining:

(1) interviews and focus groups of affected community members;

(2) local public records, including land-related court claims, documentation of forced migration and publicly available health records;

(3) cross-culturally validated scales, including data collected by national statistics agencies and organizations such as UNICEF and the World Bank;

(4) data collected for the Sustainable Development Goals; and

(5) remote sensing and imagery, including satellite imagery showing how farmland has changed after cobalt mining is established.

The researchers believe such methods can be applied to other scenarios beyond cobalt mining to gather social data surrounding emerging technologies.

“We have a long way to go before we can put S-LCA results in front of decision-makers in the same way we can with E-LCA results,” Dunn said. “In the meantime, our society is going through huge changes, including climate change, so we feel a sense of urgency. We hope that policy makers recognize the urgency of the human costs of cobalt mining sooner rather than later.”

The study, “Addressing the social life cycle inventory analysis data gap: Insights from a case study of cobalt mining in the Democratic Republic of the Congo,” was supported by Leslie and Mac McQuown, the Northwestern Institute on Complex Systems and the Carnegie Corporation.

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Pain and anxiety impact breathing on a cellular level

You’re startled by a threatening sound, and your breath quickens; you smash your elbow and pant in pain. Why a person’s breathing rate increases dramatically when they’re hurting or anxious was not previously understood. Now, a team of Salk scientists has uncovered a neural network in the brain that coordinates breathing rhythm with feelings of pain and fear. Along with contributions to the fields of pain management, psychological theories of anxiety, and philosophical investigations into the nature of pain, their findings could lead to development of an analgesic that would prevent opioid-induced respiratory depression (OIRD), the disrupted breathing that causes overdose deaths.

In the study published on December 17, 2021, in Neuron, the Salk group focused on a group of neurons in the brainstem called the lateral parabrachial nucleus, which is arranged in a core-shell configuration. They found that neurons in the core project to the amygdala, an area of the brain that processes fear and the emotional experience of pain. Neurons in the shell project to the pre-Bötzinger complex, a region that generates breathing rhythm. The core and shell neurons influence each other according to inputs from these areas, making us breathe faster when we experience pain or anxiety.

“We are the first group to demonstrate how the lateral parabrachial nucleus coordinates breathing and pain,” says the paper’s senior author, Sung Han, assistant professor in Salk’s Clayton Foundation Laboratories for Peptide Biology. “By understanding the circuits in this brain region, we may be able to tease apart breathing regulation and pain regulation to develop a medication that inhibits feelings of pain without repressing breathing, like OIRD.”

In OIRD, opioids repress breathing as well as pain; it is the major cause of death from opioids. In previous work,Han’s lab showed that opiates like morphine repress breathing by triggering specific receptors, called mu opioid receptors (MOR), leading to the inhibition of neurons that express them. They also showed that reactivating the cells that express MOR can reverse OIRD. The current work suggests additional approaches for preventing OIRD, possibly by inhibiting neurons in the region’s core (blunting fear/anxiety) while exciting similar neurons in the shell (supporting breathing).

To show how these neurons coordinate breathing with pain and emotions, the researchers first used light and chemical agents to prove that manipulating the MOR-expressing neurons in the lateral parabrachial nucleus alters breathing rate in mice. They then used fluorescent tracers to map the inputs and outputs to the MOR-expressing neurons. Their results indicated that neurons clustered in the core of the region project to the central amygdala, while neurons clustered in the surrounding shell project to the pre-Bötzinger complex. Electrophysiological recordings of one population while stimulating the other population revealed that some of those subpopulations are reciprocally connected, with an excitatory network between them. Via this network, signals of fear and pain were coordinated with breathing rhythms.

“We have found very intricate circuits involving upstream and downstream input to these neurons. By uncovering this circuit mechanism, we can better explain why breathing can often be coordinated with pain and anxiety,” says first author Shijia Liu, a graduate student in Han’s lab.

Han is eager to see the team’s discovery have a translational application. “The biggest problem these days is that opioids reduce pain but also reduce breathing, so people die,” says Han, holder of the Pioneer Fund Development Chair. “By understanding those two mechanisms in our research, maybe we can manipulate certain populations of neurons by pharmacological intervention so that we can control pain without changing the breathing.”

Han’s group is currently working on genetic analyses of the core and shell population to identify functional markers that specifically regulate pain or breathing.

Other authors on the study are Mao Ye, Gerald M. Pao, Jinho Jhang, Jonghyun Kim, Sukjae Joshua Kang, Dong-Il Kim of Salk; and Samuel Myeongsup Song and Haibei Jiang of the University of California San Diego.

The research was supported by the National Institute of Mental Health, the Brain Research Foundation, the Mary K. Chapman Foundation, the Jesse & Caryl Philips Foundation, the National Institutes of Health-National Cancer Institute and the Waitt Foundation.

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Materials provided by Salk Institute. Note: Content may be edited for style and length.

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Alzheimer’s drug aducanumab not approved for use in EU

Charities are disappointed but regulators say there is still little evidence of the drug’s benefit.

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Coast redwood and sequoia genome sequences completed

Scientists have completed the sequences for the coast redwood and giant sequoia genomes. The research, officially published this week in the journal G3: Genes, Genomes, Genetics,helps to better explain the genetic basis for these species’ ability to adapt to their changing environments. The research indicates that the coast redwood genome evolved from a single ancestral species.

The multiyear effort was conducted by researchers at University of California, Davis; Johns Hopkins University; University of Connecticut; and Northern Arizona University; and was funded by Save the Redwoods League. The research provides the foundation to better understand redwood responses to climate impacts and pathogens.

The research team previously made available the completed giant sequoia genome research in November 2020.

“It’s remarkable how far genomics research has come since we undertook this challenge in 2017,” said David Neale, plant sciences professor emeritus at UC Davis and lead author on the new coast redwood genome research. “Our work on the coast redwood and giant sequoia genomes will enable us to develop modern genetic tools that can be used in the restoration and conservation of these ecologically important tree species.”

The league and its research partners launched the Redwood Genome project in 2017. Project partners outlined an ambitious plan to fully sequence the coast redwood and giant sequoia genomes for the first time using new conifer genetic sequencing techniques.

The genomic resources and screening tools developed in this project will help researchers quickly assess evolutionary adaptive potential in these forests and ultimately inform forest restoration and management plans.

The coast redwood genome

The coast redwood is the world’s tallest tree, and its genome is among the most complex sequenced. Nearly nine times larger than the human genome, it is also the second largest genome sequenced. The redwood genome has 26.5 billion base pairs of DNA, and it is hexaploid, meaning redwoods have six sets of chromosomes. Humans have 3 billion base pairs of DNA and are diploid, with two sets of chromosomes.

When comparing the coast redwood genome sequence to that of other conifers, researchers found hundreds of gene families unique to the coast redwood. Many are genes that help the trees respond to and fight stress, resist disease and repair after injury.

The giant sequoia genome

The giant sequoia is the world’s largest tree species and among the oldest on the planet. As reported by the research team in 2020, its genome contains 8.125 billion base pairs of DNA. Similar to the human genome, the giant sequoia genome is diploid. The reference genome produced for this study represents the first genome sequenced in the Cupressaceae family, and it lays a foundation for using genomic tools to aid in giant sequoia conservation and management.

The genomes of conifers are three to 10 times larger than the human genome. They are highly repetitive and complex. The first conifer genomes ever sequenced were the Norway spruce in 2013 and loblolly pine in 2014, 10 years after the human genome was completed.

Sequencing conifer genomes was not previously feasible due to economic and technical limitations. With technological advancements that also reduced the cost, 10 conifer genomes have now been sequenced.

About the Redwood Genome Project

In the last 160 years, commercial logging and clear-cutting claimed 95% of the coast redwood range and about one-third of the giant sequoia range. In 2020, an estimated 10%-14% of giant sequoia died from high-intensity wildfires, and in some areas the seedbank also died.

Two wildfires also burned through large sections of the giant sequoia range in 2021, and mortality from those is currently estimated to impact another 5% of the mature trees. As a result, both forests have experienced significant losses in total acreage and genetic diversity.

With these significant impacts to both populations, the league is leading restoration projects in both forest ranges. It aims to use this and future genetic research to inform efforts to restore and maintain genetic diversity and bolster the resilience of these species in the face of rapid, unprecedented environmental change.

“This ambitious scientific research provides a critical foundation for the League and the entire redwoods community,” said Joanna Nelson, Ph.D., director of science and conservation planning for Save the Redwoods League. “It will ultimately help us understand the incredible range of responses that coast redwood and giant sequoia species have exhibited in the face of climate change and how native genetic diversity has informed these responses. The Redwood Genome Project helps us see, for the first time, the full genetic diversity that has allowed these forests to adapt and survive for millennia — and could protect them against a suite of conditions they have never experienced.”

The study was supported by grants from National Science Foundation, USDA, and National Institutes of Health. Save the Redwoods League donors contributed over $1 million to the Redwood Genome Project through Forever Forest: The Campaign for the Redwoods, including a significant lead gift from Ralph Eschenbach and Carol Joy Provan. Genomic services companies Illumina, Oxford Nanopore Technologies and Dovetail Genomics contributed in-kind.

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Fire and ice: The puzzling link between western wildfires and Arctic sea ice

“Some say the world will end in fire,” wrote Robert Frost a century ago. The poet described one popular take on the world’s end before shifting to its apocalyptic opposite, writing, “some say in ice.”

But the relationship between fire and ice, in terms of Earth’s climate, is not quite as “either or” as Frost depicted. In the case of a study presented today at the 2021 AGU Fall Meeting in New Orleans, that relationship is more “give and take.”

The team of researchers behind the recent study describe a link between dwindling sea ice and worsening wildfires in the western United States. As sea ice melts from July to October, sunlight warms the increasingly iceless, surrounding area. This ultimately brings heat and fire-favorable conditions to distant states like California, Washington, and Oregon later in autumn and early winter.

The researchers describe this relationship — its existence previously known, but its underlying mechanism now described for the first time — as similarly influential as climate patterns like the El Niño-Southern Oscillation.

“It’s not a perfect analogy, but teleconnections like this are a bit like the butterfly effect,” said Hailong Wang, an Earth scientist at the Department of Energy’s Pacific Northwest National Laboratory and coauthor of the new study. He references the popular feature of chaos theory where a butterfly’s flapping wings are thought to influence the formation of a distant tornado.

“Climate conditions in one part of the world can, over time, influence climate outcomes from thousands of kilometers away,” said Wang. “In our case, we find the Arctic region and the western United States are connected by this relationship. Regional land and sea surface warming caused by sea ice loss distantly triggers hotter and drier conditions in the West later in the year.”

Wang presented his findings virtually at an AGU press conference that explored wildfire in a changing climate on Dec. 16.

A tale of two vortices

Wang and his fellow authors found that, as Arctic sea ice melts and the surrounding land and sea surfaces warm, a vortex strengthens in the atmosphere above the heated area. This vortex, spinning counterclockwise like a cyclone, is spawned by differences in air pressure.

The powerful vortex constantly pushes the polar jet stream out of its typical pattern, diverting moist air away from the western United States. With the now wavier jet stream nudged off its usual course, a second vortex, spinning clockwise, forms under the ridge of the polar jet above the western United States. This second vortex — similar to the vortex responsible for the Pacific Northwest’s extreme heat earlier this summer — brings with it clear skies, dry conditions and other fire-favorable weather.

As the Arctic continues warming, it can sharpen the contrast between these two distantly connected systems, further exacerbating conditions in an already fire-ravaged region. More than three million acres have burned across California alone during the 2021 wildfire season.

“This dynamics-driven connection warms and dries out the western United States region,” said Yufei Zou, lead author and data scientist who was a postdoc at PNNL when the study was conducted. “By uncovering the mechanism behind that teleconnection, we hope those in charge of managing forests and preparing for wildfires will be more informed.”

Less ice, more heat

To probe the influence of Arctic sea ice in forming fire-favorable climate conditions, the study’s authors called upon the past four decades of recorded sea ice levels. The team isolated the mechanism at play through modeling conducted at the National Energy Research Scientific Computing Center, a DOE Office of Science user facility at Lawrence Berkeley National Laboratory.

Arctic sea ice has continually declined since scientists began measuring its loss in the late 1970s. End-of-summer sea ice cover has diminished by 13 percent each decade relative to the 1981-2010 average, according to the National Oceanic and Atmospheric Administration.

Arctic sea ice is projected to continue declining, eventually leading to periods of iceless Arctic waters before the 2050s. Today, even the older, thicker ice that persists year-round is now thinner and more fragile.

In addition to Wang and Zou, authors from PNNL include Philip J. Rasch and Rudong Zhang.

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‘I’ve got Covid so am self-isolating alone at Christmas’

Anyone testing positive now will be self-isolating on 25 December.

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Covid: ‘We’re not looking forward to doing it all again’

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Omicron symptoms: Is a runny nose a cold or Covid?

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Some who shielded need support now say charities

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Soils in old-growth treetops can store more carbon than soils under our feet

New research reveals a previously underappreciated way old-growth forests have been recycling and storing carbon: treetop soils. Branches in forest canopies can hold caches of soil that may store substantially more carbon than soils on the ground beneath them, and scientists are just beginning to understand how much carbon canopy soils — which exist on every continent except Antarctica — could store.

The new research on these unique soils, being presented on Wednesday, 15 December at AGU Fall Meeting 2021, marks the first attempt to quantify carbon capture by canopy soils. The work highlights another way old-growth forests are rich, complex ecosystems that cannot be quickly replaced by replanting forests.

Tree branches collect fallen tree leaves and other organic material over hundreds of years, like the ground does. On top of the branches, the plant litter decomposes as it accumulates, forming a carbon-rich layer that can be several inches thick. The researchers climbed up into the rainforest canopy in Costa Rica, instruments in hand, to find out just how much carbon canopy soils can contain.

Active carbon, a short-term storage pool of organic carbon, was three times higher in canopy soil compared to soils underfoot, the researchers found.

“We knew these would be really organic-rich soils, but we didn’t expect the extremely large amount of carbon compared to mineral soils,” said Hannah Connuck, an undergraduate researcher at Franklin and Marshall College who will be presenting the study results.

The researchers are still calculating the total concentration of organic carbon at their research site, but other research has found canopy soils to have up to 10 times higher concentrations of organic carbon, according to soil scientist Peyton Smith, a study co-author and Connuck’s soil science mentor at Texas A&M University.

Connuck and Smith also measured how much carbon dioxide was being released by microbial organisms living in the canopy soils, which is critical for knowing whether soils are storing or releasing carbon overall. They found that even though the microbes were releasing higher volumes of carbon dioxide than ground soils, their rate of carbon storage was rapid enough to compensate, likely making canopy soils a net carbon sink that has not been considered in carbon models yet.

“It could be a substantial carbon sink, and we need to account for it,” Smith said.

Like other soils, canopy soils take a long time to form, and therefore take a long time for a forest to recover if an area of old growth is cut down. The soils also host unique microbiomes, including highly diverse microbial organisms and canopy-specific plants like epiphytic orchids.

“It’s a good argument for keeping primary and other old-growth forests around, rather than harvesting and replanting with secondary growth forests,” Connuck said.

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Materials provided by American Geophysical Union. Note: Content may be edited for style and length.

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