Researchers discover that anti-malaria drugs can fight pulmonary disease

A research team at Colorado State University has discovered that drugs used to treat malaria are also effective at treating a pulmonary disease similar to tuberculosis.

Their findings were featured on the cover of the Feb. 23 issue of Science Translational Medicine.

The study is a significant development in the fight against infections caused by non-tuberculous mycobacteria, or NTM, which are now more common than tuberculosis in the United States and often attack people who have a weakened immune system or preexisting conditions like chronic obstructive pulmonary disease or cystic fibrosis.

“There are currently very few antibiotics available to treat NTM infections, and some patients fail to respond to any treatment,” said Professor Mary Jackson of CSU’s Department of Microbiology, Immunology and Pathology, one of the lead authors. “The perspective that antimalarial drugs that already have undergone advanced clinical trials may become part of the arsenal of drugs available to fight these infections could have an immediate impact in the clinic.”

The research, which was led by Jackson and lead author Juan Manuel Belardinelli, a research scientist in CSU’s Department of Microbiology, Immunology and Pathology, targeted an NTM known as Mycobacterium abscessus. Few drugs are effective against this mycobacterium, and the ones that are tend to be toxic and cause bad side effects, Jackson said.

Targeting disease’s defense mechanism

Jackson and Belardinelli worked with other members of CSU’s Mycobacteria Research Laboratories to target one of the key defense mechanisms that this mycobacterium deploys to fight off our immune system and antibiotics.

The researchers believe that the bacterium is capable of sensing and responding to threats in its environment, such as lowered oxygen levels, oxidative stress and acidic pH, which are our body’s natural ways of fighting disease. It does so by activating, among other things, a regulator known as DosRS which controls many essential functions in the bacterium such as its respiration, ability to form biofilms and ability to enter a dormant state when the conditions are not favorable to bacterial multiplication.

They found that in mice, two existing antimalarial drugs were able to prevent DosRS from responding to stresses, meaning that the bacterium struggled to fight off antibiotics and the immune system’s natural disease response.

“It blocked the regulator and kept it from doing its job,” Jackson explained. “One of the things the treatment did, in particular, was to lower the bacterium’s ability to form biofilms, thereby reducing its ability to resist killing by antibiotics.”

The treatment alone was just as effective at dropping bacterial loads in the lungs as the combination of antibiotics currently used to treat the disease.

The lead authors are now working with doctors at National Jewish Health to administer the drug that proved most effective — OZ439 — to humans, particularly those with cystic fibrosis.

“Treatment of M. abscessus is especially challenging because a minimum of three to four antibiotics are needed in combination, and there are few available options,” said Dr. Jerry Nick, a pulmonologist at National Jewish Health. “The repurposing of antibiotics developed for other infections for use in the treatment of M. abscessus has proven to be the most successful route to increasing available therapies for this serious disease. This report is especially exciting because these compounds were both effective against the infection and also increased the effectiveness of other antibiotics. The repurposing strategy reduces the time needed to test these compounds in clinical trials, as often there is a proven track record of safety and clinical experience.”

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Materials provided by Colorado State University. Note: Content may be edited for style and length.

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With land grabs comes competition for water — and local farmers are likely to lose

Water from Ethiopia’s Omo River, which flows for 472 miles along the country’s southwest side, has helped sustain the livelihood of tribal populations for hundreds of years. Human rights organizations have estimated 200,000 people from various tribes in the region rely on the Omo’s water for cattle and to grow crops like sorghum and maize.

But new research shows large-scale land acquisitions (LSLAs) in the region could threaten water resources downstream to the local farmers and Indigenous populations living along the Omo — just one example of how a decades-long “global land rush” could intensify water scarcity around the world.

Researchers at the University of Notre Dame, the Polytechnic University of Milan, the University of California, Berkeley, Colorado State University, the University of Delaware and Vrije University Amsterdam studied 160 land deals made between 2005 and 2015 across Europe, South America, Africa and Asia for the study, published in Nature Communications. Hydrological models used to simulate future cultivation of those deals found close to two-thirds of those deals are unsustainable.

“The idea of this study was to quantify how many of these deals, how much of this land acquisition would cause competition and water grabbing — and how much is actually beneficial. We found that the majority of those land acquisitions actually cause competition,” said Marc Müller, assistant professor in the Department of Civil and Environmental Engineering and Earth Sciences at Notre Dame and co-author of the study. “We looked at the crops being planted and the water needed for those crops, and what we found is that if the acquisitions go as planned, if these crops and the area of irrigated land changes the way investors have said they plan to change it — there’s not enough water for everybody.”

More than 220 million acres of land in middle-income and developing countries were purchased through LSLAs to increase production of local staple crops and to produce export-bound crops such as wheat and those that could be utilized for biofuel, such as palm oil and sugar cane.

“You need a lot of water to produce these foods,” said Müller. Some of that need is met by rainfall, or green water. When green water isn’t enough to meet the needs of the crop, the next step is supplemental irrigation using blue water, or water that can be redirected or taken from one source and used elsewhere. But supplemental irrigation is unsustainable when it depletes blue water resources — leaving independently owned farmlands and local populations hurting.

“If you have blue water scarcity — if there is not enough water to irrigate after the land acquisition — that creates competition with local water users,” Müller said. “All the communities that rely on the same water — now they don’t have enough for their own crops.”

An outcome those living along the Omo River could very well face.

As part of the study, Müller and his co-authors closely examined development of two land deals, simulating the need for surface water irrigation in Western Ethiopia, and found increases in water scarcity downstream. “That was surprising,” Müller said. “If you withdraw the water from the system upstream, it clearly affects how much stream flow is available downstream. All the people along the river that rely on that water — they will feel it. There will be less water available for use. You can see the broad effects downstream. It goes way further than I actually expected.”

The study highlights how the globalization of land and food systems can put additional stress on water resources and limit water access at the local level.

“By increasing how much water is necessary at any given locations, these deals shift the balance and water becomes very limited locally,” said Müller. “One of the arguments of this project is, are these agricultural transitions from small-holder, traditional farming to large, mechanized agriculture beneficial? You want to determine when evaluating the impact of an impending deal whether the benefits are going to outweigh the costs.”

The research is part of a series of studies the team has done to examine the impact of LSLAs on a broad scale, identifying global patterns and observations. A previous study focused on the impacts on food security.

Müller is an affiliated faculty member of Notre Dame’s Environmental Change Initiative. Co-authors of the study include Gopal Penny, then a postdoctoral student at Notre Dame and currently assistant professor at the National University of Singapore; Davide Danilo Chiarelli and Maria Cristina Rulli at the Polytechnic University of Milan; Paolo D’Odorico at the University of California, Berkeley; Nathaniel D. Mueller at Colorado State University; Kyle Frankel Davis at the University of Delaware; and Jampel Dell’Angelo at Vrije University Amsterdam.

The National Science Foundation partially funded the study.

Story Source:

Materials provided by University of Notre Dame. Original written by Jessica Sieff. Note: Content may be edited for style and length.

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Harnessing the power of AI to advance knowledge of Type 1 diabetes

An interdisciplinary team of researchers from the University of Missouri, Children’s Mercy Kansas City and Texas Children’s Hospital has used a new data-driven approach to learn more about persons with Type 1 diabetes, who account for about 5-10% of all diabetes diagnoses. The team gathered its information through health informatics and applied artificial intelligence (AI) to better understand the disease.

In the study, the team analyzed publicly available, real-world data from about 16,000 participants enrolled in the T1D Exchange Clinic Registry.By applying a contrast pattern mining algorithm developed at the MU College of Engineering, the team was able to identify major differences in health outcomes among people living with Type 1 diabetes who do or do not have an immediate family history of the disease.

Chi-Ren Shyu, the director of the MU Institute for Data Science and Informatics (MUIDSI), led the AI approach used in the study, and said the technique is exploratory in nature.

“Here we let the computer do the work of connecting millions of dots in the data to identify only major contrasting patterns between individuals with and without a family history of Type 1 diabetes, and to do the statistical testing to make sure we are confident in our results,” said Shyu, the Paul K. and Dianne Shumaker Professor in the MU College of Engineering.

Erin Tallon, a graduate student in the MUIDSI and the lead author on the study, said the team’s analysis resulted in some unfamiliar findings.

“For instance, we found individuals in the registry who had an immediate family member with Type 1 diabetes were more frequently diagnosed with hypertension, as well as diabetes-related nerve disease, eye disease and kidney disease,” Tallon said. “We also found a more frequent co-occurrence of these conditions in individuals who had an immediate family history of Type 1 diabetes. Additionally, individuals who had an immediate family history of Type 1 diabetes also more frequently had certain demographic characteristics.”

Tallon’s passion for this project began with a personal connection, and quickly grew as a result of her experience working as a nurse in an intensive critical care unit (ICU). She would often see patients with Type 1 diabetes who were also dealing with other co-existing conditions such as kidney disease and high blood pressure. Knowing that a person’s Type 1 diabetes diagnosis often occurs only when the disease is already very advanced, she wanted to find better ways for prevention and diagnosis, starting with finding a way to analyze the large amounts of publicly available data already collected about the disease.

In 2019, Mark Clements, who is a pediatric endocrinologist at Children’s Mercy Kansas City, professor of pediatrics at University of Missouri-Kansas City and corresponding author on the study, was invited to speak at the Midwest Bioinformatics Conference hosted by BioNexus KC. While Tallon wasn’t able to attend Clements’ presentation, she followed up with a phone call to share her proposal for helping people better understand Type 1 diabetes. He was intrigued. Eventually, Tallon introduced Clements to Shyu, and an ongoing research collaboration was born.

Tallon said the results of the collaboration speak to the power and value of using real-world data.

“Type 1 diabetes is not a single disease that looks the same for everybody — it looks different for different people — and we’re working on the cutting-edge to address that issue,” Tallon said. “By analyzing real-world data, we can better understand risk factors that may cause someone to be at higher risk for developing poor health outcomes.”

While the results are promising, Tallon said researchers were limited by not having a population-based data set to work with.

“It is important to note here that our findings do have a limitation that we hope to address in the future by using larger, population-based data sets,” Tallon said. “We’re looking to build larger patient cohorts, analyze more data and use these algorithms to help us do that.”

Personalizing medicine

Clements hopes the approach can be adopted as a way to help develop personalized treatment options for people with diabetes.

“In order to get the right treatment to the right patient at the right time, we first need to understand how to identify the patients who are at a higher risk for the disease and its complications — by asking questions such as if there are characteristics early in someone’s life that can help identify an individual with high risk for an outcome years down the road,” Clements said. “Having all of this information could one day help us establish a more complete picture of a person’s risk, and we can use that information to develop a more personalized approach for both prevention and treatment.”

“Contrast pattern mining with the T1D Exchange Clinic Registry reveals complex phenotypic factors and comorbidity patterns associated with familial versus sporadic Type 1 diabetes,” was published in Diabetes Care, a journal of the American Diabetes Association. MU graduate students Danlu Liu and Katrina Boles, and Maria Redondo at Texas Children’s Hospital, also contributed to the study.

The study’s authors would like to thank the funding agency of the T1D Exchange Clinic Registry, the Helmsley Charitable Trust, the investigators located across the country who drove the data collection for the registry, as well as all of the registry’s participants and their families who were willing to share their medical information.

The researchers would also like to acknowledge the support provided by grants from the National Institutes of Health (5T32LM012410) and the National Science Foundation (CNS-1429294). The content is solely the responsibility of the authors and does not necessarily represent the official views of the funding agencies.

Potential conflicts of interest are also noted by two of the study’s authors — Clements and Shyu. Clements is the chief medical officer at Glooko, and receives support from Dexcom and Abbot Diabetes Care. Shyu is a consultant for Curant Health.

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Covid: Spring booster jab launches for over-75s and high risk in England

Experts say it will help keep the most vulnerable protected against severe illness amid rising infections.

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Covid trapped me at home for more than seven months

But a vaccine – the first time one has been used to treat Covid – set Ian Lester free.

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Menopause: The Bedfordshire clinic that is ‘changing lives’

Sam Price says help is available for women who are “all over the place” due to the menopause.

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Omicron vs Zero-Covid: How long can China hold on?

China’s worst outbreak in two years has got some questioning how long it can hang on to its strategy.

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In Mariupol, children bear the brunt of Vladimir Putin’s war

At a children’s hospital near the besieged city, the true impact of Russia’s tactics are on display.

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Coronavirus: Spring booster offered to elderly and vulnerable in England

Up to five million elderly and vulnerable people will be eligible, with the first invites sent this week.

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Amid war and disease, World Happiness Report shows bright spot

In this troubled time of war and pandemic, the World Happiness Report 2022 shows a bright light in dark times. According to the team of international researchers, including McGill University Professor Christopher Barrington-Leigh, the pandemic brought not only pain and suffering but also an increase in social support and benevolence.

As the world battles the ills of disease and war, it is especially important to remember the universal desire for happiness and the capacity of individuals to rally to each other’s support in times of great need, say the authors of the report. This year marks the 10th anniversary of the World Happiness Report, which uses global survey data to report on how people evaluate their own lives in more than 150 countries around the world reaching over 9 million people in 2021.

“COVID-19 is the biggest health crisis we’ve seen in more than a century,” says Professor John Helliwell of the University of British Columbia. “Now that we have two years of evidence, we are able to assess not just the importance of benevolence and trust, but to see how they have contributed to well-being during the pandemic.”

Growth in acts of kindness

Helliwell adds “We found during 2021 remarkable worldwide growth in all three acts of kindness monitored in the Gallup World Poll. Helping strangers, volunteering, and donations in 2021 were strongly up in every part of the world, reaching levels almost 25% above their pre-pandemic prevalence. This surge of benevolence, which was especially great for the helping of strangers, provides powerful evidence that people respond to help others in need, creating in the process more happiness for the beneficiaries, good examples for others to follow, and better lives for themselves.”

Finland takes the top spot while Canada drops to 15th place

For the fifth year in a row Finland takes the top spot as the happiest in the world. This year its score was significantly ahead of other countries in the top ten. Denmark continues to occupy second place, with Iceland up from 4th place last year to 3rd this year. Switzerland is 4th, followed by the Netherlands and Luxembourg. The top ten are rounded out by Sweden, Norway, Israel and New Zealand. The next five are Austria, Australia, Ireland, Germany and Canada, in that order. This marks a substantial fall for Canada, which was 5th ten years ago.

“The downward trend for Canada is significant and has been going on steadily for years. While Canada once ranked beside the Scandinavian countries, it now ranks closer to the United States in people’s overall evaluation of how good their lives felt,” says Professor Christopher Barrington-Leigh of McGill University.

The rest of the top 20 include the United States at 16th (up from 19th last year), the UK and the Czechia still in 17th and 18th, followed by Belgium at 19th and France at 20th, its highest ranking yet. Overall, the three biggest gains were in Serbia, Bulgaria, and Romania. The biggest losses were in Lebanon, Venezuela, and Afghanistan.

  1. Finland
  2. Denmark
  3. Iceland
  4. Switzerland
  5. Netherlands
  6. Luxembourg
  7. Sweden
  8. Norway
  9. Israel
  10. New Zealand
  11. Austria
  12. Australia
  13. Ireland
  14. Germany
  15. Canada

Conflict in Afghanistan takes a toll

Jan-Emmanuel De Neve, the Director of the Wellbeing Research Centre at the University of Oxford notes that “At the very bottom of the ranking we find societies that suffer from conflict and extreme poverty, notably we find that people in Afghanistan evaluate the quality of their own lives as merely 2.4 out of 10. This presents a stark reminder of the material and immaterial damage that war does to its many victims and the fundamental importance of peace and stability for human wellbeing.”

Progress marked by measures of happiness

“The World Happiness Report is changing the conversation about progress and wellbeing. It provides important snapshots of how people around the world feel about the overall quality of their lives,” says McGill University Professor Christopher Barrington-Leigh. According to the researchers, this information can in turn help countries to craft policies aimed at achieving happier societies.

Past reports have looked at the links between people’s trust in government and institutions with happiness. The findings demonstrate that communities with high levels of trust are happier and more resilient in the face of a wide range of crises.

About the report

The World Happiness Report is a publication of the Sustainable Development Solutions Network, powered by the Gallup World Poll data.

Read: https://worldhappiness.report/

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