Self-swabbing tests for COVID-19 accurate and safe, study reports

Test samples collected by people who swabbed their own nasal passages yielded results for the COVID-19 virus that were as accurate as samples collected by a health care worker, according to a small study by researchers at the Stanford University School of Medicine.

The study was published June 12 in the Journal of the American Medical Association.

The 30 study participants, who previously had tested positive for COVID-19, collected their own samples at a drive-through testing site after watching a short video animation and reading a one-page document instructing them how to perform the swab. The nasal swab for the study is more comfortable to use than the long nasopharyngeal swab currently used to collect samples from the back of the nasal cavity.

Allowing people who suspect they may have COVID-19 to collect their own sample has many advantages. Sample-collection kits could be widely distributed, allowing more people to be tested. Those using the kit wouldn’t have to travel to a testing site, negating the risk of transmission to health care workers and others with whom they interact in transit. Self-collection would also conserve supplies of personal protective equipment used by health care workers.

“There is an urgent need to increase our testing capacity to slow the overall spread of the virus,” said Yvonne Maldonado, MD, professor of pediatric infectious diseases and of health research and policy. “A sample collection procedure that can safely and easily be performed by the patient in their own car or at home could reduce the exposure of health care workers and also allow many more people to submit samples for testing.”

Maldonado is the senior author of the study, which was conducted in collaboration with Andra L. Blomkalns, MD, the Redlich Family Professor and professor and chair of emergency medicine, and Prasanthi Govindarajan, MD, associate professor of emergency medicine; senior research data analyst Jonathan Altamirano is the lead author.

Providing nasal swab instructions

The study participants had tested positive in March at Stanford Health Care for the virus that causes COVID-19. Maldonado and her team contacted each of them by phone at home and provided them with written instructions and a short video about how to collect a nasal swab.

They were asked to return to Stanford Health Care for drive-through testing. At that visit, they collected their own specimen by applying a nasal swab to both nostrils. Then, a physician collected two additional samples using a nasal swab and a swab applied to the back of the throat and the tonsils. All three samples were tested for the presence of the virus at the Stanford Clinical Virology Laboratory.

Of the 30 participants, 29 received identical results — either positive or negative for the presence of the virus — for the three samples. Eleven of the participants were positive, and 18 were negative. One person’s self-collected swab at the drive-through site revealed the presence of the virus, whereas the two swabs collected by the physician tested negative.

The researchers were also interested in learning how long an infected person would test positive for the virus after they first experienced symptoms.

Twenty-three participants reported that they first experienced symptoms between four and 37 days prior to returning for the drive-through test. (The timing of symptom onset was unavailable for seven of the participants.) Of the 12 people who returned within two weeks after symptoms began, seven tested positive; of the 11 people who returned for testing more than two weeks after symptom onset, only two tested positive.

“It is critical for us to understand how long an infected person may remain infectious and what the pattern of transmission might be within their household,” Maldonado said. “This information would help public health workers craft guidelines as to how long a person with COVID-19 should remain quarantined and when it is likely to be safe to interact again with family members and co-workers. Understanding the timeline of viral shedding will be particularly important for previously infected health care workers who are needed to care for other COVID-19 patients.”

Other Stanford co-authors of the study are pediatric fellow Lauren Kushner, MD; pathology fellow Bryan Stevens, MD; and Benjamin Pinsky, MD, PhD, associate professor of pathology and of medicine.

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Materials provided by Stanford Medicine. Original written by Krista Conger. Note: Content may be edited for style and length.

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As rare animals disappear, scientist faces ‘ecological grief’

Five years before the novel coronavirus ran rampant around the world, saiga antelopes from the steppes of Eurasia experienced their own epidemic.

Millions of these grazing animals — easily recognizable by their oversized snouts — once migrated across what is today Kazakhstan, Mongolia, Georgia and more.

But then, over the span of three weeks in 2015, nearly 200,000, or two-thirds of their existing population, sickened and died from a bacterial infection. Today, the a little more than 100,000 saiga are hanging onto survival in a few pockets of Eurasia.

The decline, and uncertain fate, of the saiga is a story that resonates with Joanna Lambert. She’s a conservation biologist at the University of Colorado Boulder and a coauthor of a paper published this week in the journal Frontiers in Ecology and Evolution. The study explores the current state of ungulates, or hoofed animals like the saiga, in the western U.S. and around the world.

Lambert, who has studied ecological communities in both North America and Equatorial Africa, explained that many of these creatures aren’t well-known outside of their home regions. But when these animals disappear, entire ecosystems can reshuffle, occasionally beyond recognition.

“We’re losing these animals without people ever knowing they were there in the first place,” said Lambert, a professor in the Program of Environmental Studies at CU Boulder.

For the researcher, the study’s publication marks an opportunity to reflect on how she stays hopeful even amid tremendous losses — and how to talk about the natural world during a period of unprecedented social upheaval.

“I tell my students, ‘I have to give you the facts. This is the world you’re growing up in, but don’t let that paralyze you,'” Lambert said.

Unsung species

The new research was led by Joel Berger of Colorado State University and also included scientists from Bhutan, Argentina and Chile.

The team decided to look at ungulates because — with a few exceptions like rhinos and elephants — they don’t usually pop up in brochures for conservation organizations. But, Lambart said, they’re still in trouble: Huemel, for example, once roamed across the Patagonia region of South America. Today, a little more than 1,000 of these fluffy deer still live in the wild. The tamaraw, a pint-sized buffalo from the Philippines, is down to just a few hundred individuals.

“The whole world knows the stories of pandas and mountain gorillas, but there are untold numbers of unsung species that come and go without the world’s attention,” she said.

Their cases also show just how complicated conservation can be.

Lambert has spent years trekking the grasslands and forests of Yellowstone National Park to study wildlife. After federal officials killed all the park’s wolves in the 1940s, elk herds there began to multiply — big time. Head counts for these herbivores surged from a few thousand individuals to tens of thousands, and they devoured once-abundant plants like cottonwood and willow trees.

“When you pull one species out of its community, or if you add a new one in, the entire assembly changes,” Lambert said. “That has been the history of what humans have done on the planet.”

When the park brought wolves back in the 1990s, and elk numbers dropped back down, something unexpected happened: beavers, which had also disappeared from Yellowstone, began reappearing, too. The furry swimmers, it turns out, depend on those same tree species to build their dams.

“In many cases, we don’t know what rules these ecosystems followed in the past,” she said. “Even when we do know, it doesn’t matter because we now have this added element of human tinkering.”

Ecological grief

Lambert has also struggled to keep going as a conservation biologist as the wilds around her field sites in Africa and North America dwindled, then vanished entirely.

“As I returned each year from the field, it was taking me longer and longer to recover from a sort of existential depression,” she said. “I realized that I have been profoundly impacted by the losses I’ve seen.”

Many of Lambert’s students feel similarly hopeless, a phenomenon that psychologists call “ecological grief.” She tells them to focus on the success stories, however rare they are. Protected areas like Yellowstone have saved countless animals from extinction and have given others like wolves new chances at survival. Lambert is also providing scientific guidance around proposals to return wolves to Colorado.

And there are still a lot of animals out there — including the few remaining herds of big-nosed saiga.

“We need to fight like hell to keep all that,” she said.

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Up to 45 percent of SARS-CoV-2 infections may be asymptomatic

An extraordinary percentage of people infected by the virus behind the ongoing deadly COVID-19 pandemic never show symptoms of the disease, according to the results of a Scripps Research analysis of public datasets on asymptomatic infections.

The findings, published in Annals of Internal Medicine, suggest that asymptomatic infections may account for as much as 45 percent of all COVID-19 cases, playing a significant role in the early and ongoing spread of COVID-19. The report highlights the need for expansive testing and contact tracing to mitigate the pandemic.

“The silent spread of the virus makes it all the more challenging to control,” says Eric Topol, MD, founder and director of the Scripps Research Translational Institute and professor of Molecular Medicine at Scripps Research. “Our review really highlights the importance of testing. It’s clear that with such a high asymptomatic rate, we need to cast a very wide net, otherwise the virus will continue to evade us.”

Together with behavioral scientist Daniel Oran, Topol collected information from testing studies on 16 diverse cohorts from around the world. These datasets — gathered via keyword searches of PubMed, bioRxiv and medRxiv, as well as Google searches of relevant news reports — included data on nursing home residents, cruise ship passengers, prison inmates and various other groups.

“What virtually all of them had in common was that a very large proportion of infected individuals had no symptoms,” says Oran. “Among more than 3,000 prison inmates in four states who tested positive for the coronavirus, the figure was astronomical: 96 percent asymptomatic.”

The review further suggests that asymptomatic individuals are able to transmit the virus for an extended period of time, perhaps longer than 14 days. The viral loads are very similar in people with or without symptoms, but it remains unclear whether their infectiousness is of the same magnitude. To resolve that issue, we’ll need large-scale studies that include sufficient numbers of asymptomatic people.

The authors also conclude that the absence of symptoms may not imply an absence of harm. CT scans conducted on 54 percent of 76 asymptomatic individuals on the Diamond Princess cruise ship, appear to show significant subclinical lung abnormalities raising the possibility of SARS-CoV-2 infection impacting lung function that might not be immediately apparent. The scientists say further research is needed to confirm the potential significance of this finding.

The authors also acknowledge that the lack of longitudinal data makes distinguishing between asymptomatic and presymptomatic individuals difficult. An asymptomatic individual is someone who is infected with SARS-CoV-2, but never develops symptoms of COVID-19, while a presymptomatic person is similarly infected, but will eventually develop symptoms. Longitudinal testing, which refers to repeated testing of individuals over time, would help differentiate between the two.

“Our estimate of 40 to 45 percent asymptomatic means that, if you’re unlucky enough to get infected, the probability is almost a flip of a coin on whether you’re going to have symptoms. So to protect others, we think that wearing a mask makes a lot of sense,” Oran concludes.

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Materials provided by Scripps Research Institute. Note: Content may be edited for style and length.

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Coronavirus: Deprived areas hit twice as hard

London was overwhelmingly the hardest-hit area in the country, says the Office for National Statistics.

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Health24.com | Is it a heart attack or just bloating?

  • Sophisticated medical equipment can sometimes give false readings
  • A man who was sedated and on a ventilator in the ICU showed signs of a heart attack when he was merely bloated
  • Non-heart-related possible causes of such false readings include pancreatitis, pneumonia and intracranial bleeding

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Severe bloating can put pressure on the heart and trigger heart monitor readings that can be mistaken for a heart attack, a new case report shows.

It involved a previously healthy 41-year-old man who was seen by doctors at the University of Southern California in Los Angeles, after three weeks of lower extremity swelling, fatigue and shortness of breath.

He was taken to the intensive care unit and later diagnosed with metastatic Hodgkin lymphoma.

While under sedation on a ventilator in the ICU, the man’s heart monitor suddenly showed the onset of ST-segment elevations – often an indicator of a heart attack.

Preventing unnecessary treatment

But when pressure was placed on the man’s upper abdomen to assess the severe bloating, the heart monitor suddenly stopped showing ST-segment elevations, according to the report in the 15 April issue of the journal JACC: Case Reports.

After a nasogastric tube was inserted to relieve the man’s bloating, an electrocardiogram (ECG) confirmed the halt of ST-segment elevations, and the man did not have any further signs of heart trouble.

“It is important to be aware that, while rare, acute gastrointestinal distention can cause ST-segment changes on an ECG. Clinicians must distinguish these cases from true heart attacks to prevent unnecessary treatment and invasive procedures whenever possible,” senior author and cardiologist Dr Enrique Ostrzega said in a journal news release.

Some non-heart-related causes of ST-segment elevation include pancreatitis, community-acquired pneumonia and intracranial bleeding.

“Careful clinical examination and setting up the correct differential diagnosis is the cornerstone of the treatment of every patient. Here – starting from an important observation – [the authors] treated the patient without needing interventional procedures,” journal editor-in-chief Dr Julia Grapsa said in the release.

Image credit: iStock

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Health24.com | Tips for staying safe – if you really need a face-to-face doctor’s visit

  • At level 3 you can visit healthcare professionals like doctors and dentists
  • There are a few extra steps you can take to keep yourself safe when going for an appointment
  • Remember, do not keep your appointment if you’re experiencing Covid-19 symptoms

Coronavirus is dominating conversations about health – but it doesn’t mean that all other health concerns have magically disappeared. 

We still have to see doctors, dentists, psychiatrists and other healthcare professionals for various other ailments and illnesses. With enforced physical distancing rules, telemedicine is becoming more popular, helping people access healthcare without putting themselves and their healthcare professionals at risk. 

This involves non-emergency appointments taking place virtually, talking to a healthcare professional about your ailments online or over the telephone, getting a diagnosis and even getting prescriptions that can be emailed.

READ: ‘Telemedicine’ stepping up amid coronavirus spread

However, there are still times you have to see a professional face-to-face to assess you better and perform physical actions. At present, making that appointment might seem somewhat daunting with the spectre of Covid-19 hanging over your head. 

Screening questions

Don’t make the appointment if you have coronavirus symptoms. The first and most important thing to remember is to not visit any healthcare professional if you are showing symptoms of the coronavirus. 

This includes a fever, a new and persistent cough, shortness of breath and/or a loss of smell and taste. 

If you have any of these symptoms, self-isolate and consult your doctor via telephone or virtual appointment to determine whether you need to get a test. 

Most ask screening questions before letting make an appointment. Before your appointment is confirmed, most practices will ask you questions regarding Covid-19-related symptoms, contact with anyone who has tested positive, your age, and if you’re in lockdown with a vulnerable person. 

This will give you some sense of comfort in that they are aiming to ensure your safety as well as their own. You can also ask them questions about the precautions they’re taking to give you peace of mind.

Take hand sanitiser with you

While hand sanitiser will be available at any health professional’s practice, having your own will help you sanitise every time you touch a surface. 

Also, wash your hands thoroughly before and after an appointment – help those looking after your health to remain healthy themselves.

ALSO READ: Touching your face is a coronavirus danger: tips to help you stop

Practising physical distancing in the reception room

The South African Dental Association recommends that patients try to arrive at their appointment exactly on time to minimise waiting in the reception room area. If you arrive early, another idea is to stay in your car until the time of your appointment. 

Most practices would have removed the customary reading material, but if they didn’t, avoid browsing or touching any surfaces in the reception area. 

Also, maintain physical distancing practices by sitting far apart from other patients. 

Wear your cloth mask during the appointment

Unless you’re visiting the dentist, or your mouth needs to be examined, keep your cloth mask on throughout the whole procedure. 

The healthcare professional will also keep their mask on throughout the appointment. 

Don’t annoy the healthcare professional by wearing surgical masks or N95 respirators – these are in short supply, and medical professionals need them. 

SEE: If you’re making a DIY face mask, these are the best materials to use according to science

What about visiting the dentist?

According to Health24, a patient is far less likely to pick up coronavirus from a dentist than the other way around. They and their assistants have to wear masks and eye coverings, and have been taking effective safety precautions since even before the outbreak. 

In your case, only remove your mask when instructed to and never in the reception area. 

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Coronavirus: Positive tests continue to fall in England, says ONS

One in 1,700 people are thought to be infected, based on 20,000 tests in households.

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Health24.com | Covid-19 antibody tests: Will they be reliable enough to manage the pandemic in the future?

  • There are currently two approved antibody tests for SARS-CoV-2.
  • These antibody tests can indicate if you’ve had Covid-19.
  • Experts are still unsure if this could determine immunity.

Countries around the world are slowly lifting hard lockdown restrictions to allow businesses and institutions to open safely without spurring another more severe wave of infections.

Many researchers agree that part of managing the pandemic involves determining who has already been exposed to SARS-CoV-2 and built up antibodies.

The method to do this? A reliable, accurate, readily-available antibody test.

There are, however, still a number of questions to be answered about whether an antibody test is possible and whether it will work.

What is an antibody test and what makes it different from the tests we already have?

An antibody test is not used as a diagnostic tool like the RT-PCR test and should not be used on a person who is showing symptoms.

The RT-PCR test is done when you are suspected of having contracted Covid-19. A swab is taken from the nasal passage or throat, and sent to a lab to check for viral material in the sample.

But the antibody test is different. This test looks for immunoglobin levels in the blood to tell whether you have had Covid-19 and built up antibodies.

Whenever your body is exposed to a pathogen such as a virus, the body’s immune system responds by producing protective measures to help you fight infection.

This agent is described as a Y-shaped molecule that attaches itself to foreign proteins such as bacteria and viruses and destroys infected cells, explains Patricia Slev who runs ARUP Laboratories, affiliated with the University of Utah.

How exactly does this test work to detect the antibodies in the blood?

According to a paper published in Chemical & Engineering News, antibody tests vary from manufacturer to manufacturer, but they all fulfil the same basic task – to detect antibodies.

Tests involve a tube of human blood being centrifuged to separate plasma from red blood cells. There is also another tube with bits of viral protein.

When the blood in the first tube has antibodies, it will be able to recognise the viral matter in the other tube and they will stick to each other.

This result means that there are antibodies present in the blood and that the person has had Covid-19 and has built immunity.

What is the current problem with these tests?

According to Shobita Parthasarathy, a science and public policy expert at the University of Michigan, many view antibody tests as a quick solution to determine whether an individual can safely venture back into society and as a tool for institutions such as businesses and schools to determine when they can reopen.

But, as she told Chemical & Engineering News, this is a lot of pressure to place on one test, as the scale of tests needed and the scope of their use in public can be ethically and logistically messy.

Earlier during the outbreak, there were several reports that these antibody tests might not be accurate and reliable and went onto the market without any regulation or standardising.

For example, the UK government spent £16 million on millions of tests – and none of them met the accuracy requirements when tested in laboratories.

But, according to Alex Greninger, a virologist and diagnostics expert at the University of Washington, these tests are slowly getting better, especially after the FDA demanded that they be validated.

The only tests currently approved are the Roche and Abbot tests, which were found to give 100% accurate results in people who had been infected with SARS-CoV-2.

If you have antibodies, are you immune?

When the antibody test has a positive result, it means that SARS-CoV-2 antibodies have been found in your blood and that you have been infected by Covid-19.

However, this doesn’t necessarily mean that you are completely immune to coronavirus, which defeats the purpose of using antibody tests as a proof of immunity to allow people back into society.

The truth is, scientists are not sure how much immunity you have after Covid-19 infection, even with the presence of antibodies.

Simply testing positive for antibodies doesn’t mean you can slack off on physical distancing and hygiene measures.

Another thing that the SARS-CoV-2 antibody tests can’t determine is how long these antibodies will last.

With some infections, the level of antibodies wears off over time, and that’s why booster vaccines are needed to help your body produce these antibodies again.

As we are still in the process of developing a vaccine, scientists also can’t tell whether these antibodies will last long enough.

But Greninger is positive that these antibodies can stick around for a long time, as early tests suggested that people with Covid-19 produce a large amount of antibodies and that the virus only mutates slowly.

How readily available will antibody tests be?

According to the paper in Chemical & Engineering News, Roche’s tests will reach a maximum production of tens of millions of tests for the entire globe by June, and Abbott also indicated mass production of these tests.

Currently the situation and availability for antibody tests in South Africa is not determined. Parthasarathy told Chemical & Engineering News that there is still concern about availability in the US alone as the demand will simply skyrocket.

A way back to normality?

So, will antibody tests be sufficient to allow us back into society?

Even though Greniger is optimistic about the future of these tests, other experts are still wary about rushing back to into society, as this might trigger a second wave of infections, and that the antibody tests are not yet able to tell us enough about our risks of getting reinfected.

READ | South Africa’s Covid-19 testing strategy needs urgent fixing: here’s how to do it

READ | Scientists warn of false-negatives with Covid-19 virus tests – what are the SA implications?

READ| Covid-19: Behind SA’s shortages of test material

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Coronavirus: ‘Start public inquiry now to prevent more deaths’

An immediate public inquiry could help save lives, say relatives of 450 virus victims.

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Half the earth relatively intact from global human influence

Roughly half of Earth’s ice-free land remains without significant human influence, according to a study from a team of international researchers led by the National Geographic Society and the University of California, Davis.

The study, published in the journal Global Change Biology, compared four recent global maps of the conversion of natural lands to anthropogenic land uses to reach its conclusions. The more impacted half of Earth’s lands includes cities, croplands, and places intensively ranched or mined.

“The encouraging takeaway from this study is that if we act quickly and decisively, there is a slim window in which we can still conserve roughly half of Earth’s land in a relatively intact state,” said lead author Jason Riggio, a postdoctoral scholar at the UC Davis Museum of Wildlife and Fish Biology.

The study, published June 5 on World Environment Day, aims to inform the upcoming global Convention on Biological Diversity — the Conference of Parties 15. The historic meeting was scheduled to occur in China this fall but was postponed due to the coronavirus pandemic. Among the meeting’s goals is to establish specific, and higher, targets for land and water protection.

Approximately 15 percent of the Earth’s land surface and 10 percent of the oceans are currently protected in some form. However, led by organizations including Nature Needs Half and the Half-Earth Project, there have been bold global calls for governments to commit to protecting 30 percent of the land and water by 2030 and 50 percent by 2050.

Intact natural lands across the globe can help purify air and water, recycle nutrients, enhance soil fertility and retention, pollinate plants, and break down waste products. The value of maintaining these vital ecosystem services to the human economy has been placed in the trillions of U.S. dollars annually.

CONSERVATION AND COVID-19

The coronavirus pandemic now shaking the globe illustrates the importance of maintaining natural lands to separate animal and human activity. The leading scientific evidence points to the likelihood that SARS-CoV2, the virus that causes the disease COVID-19, is a zoonotic virus that jumped from animals to humans. Ebola, bird flu and SARS are other diseases known to have spilled over into the human population from nonhuman animals.

“Human risk to diseases like COVID-19 could be reduced by halting the trade and sale of wildlife, and minimizing human intrusion into wild areas,” said senior author Andrew Jacobson, professor of GIS and conservation at Catawba College in North Carolina.

Jacobson said that regional and national land-use planning that identify and appropriately zone locations best suited to urban growth and agriculture could help control the spread of human development. Establishing protections for other landscapes, particularly those currently experiencing low human impacts, would also be beneficial.

FROM THE TUNDRA TO THE DESERT

Among the largest low-impact areas are broad stretches of boreal forests and tundra across northern Asia and North America and vast deserts like the Sahara in Africa and the Australian Outback. These areas tend to be colder and/or drier and less fit for agriculture.

“Though human land uses are increasingly threatening Earth’s remaining natural habitats, especially in warmer and more hospitable areas, nearly half of Earth still remains in areas without large-scale intensive use,” said co-author Erle Ellis, professor of geography at the University of Maryland-Baltimore County.

Areas having low human influence do not necessarily exclude people, livestock or sustainable management of resources. A balanced conservation response that addresses land sovereignty and weighs agriculture, settlement or other resource needs with the protection of ecosystem services and biodiversity is essential, the authors note.

“Achieving this balance will be necessary if we hope to meet ambitious conservation targets,” said Riggio. “But our study optimistically shows that these targets are still within reach.”

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