Melting sea ice forces polar bears to travel farther for food

In recent years, polar bears in the Beaufort Sea have had to travel far outside of their traditional arctic hunting grounds which has contributed to an almost 30% decrease in their population.

The bears’ home range, or the amount of space they need for food and other resources, was around 64% larger from 1999-2016 than it was in 1986-1998, according to a recent study in the journal Ecosphere.

“Having to travel farther means these bears are expending more energy which can threaten their survival,” said Anthony Pagano, a postdoctoral researcher in Washington State University’s School of the Environment and lead author of the study. “If we want to preserve the habitat of these amazing mammals, then we need to focus on the root of the problem, which is slowing global climate change.”

For the study, Pagano and colleagues from the U.S. Geological Survey used satellite tracking data to analyze the movement patterns of female polar bears from 1986-2016 in the Beaufort Sea area north of Alaska.

Their work showed over the last two decades polar bears are having to travel farther north of their traditional hunting grounds on the continental shelf to remain on their receding sea ice habitat.

Extending around 100 miles north of Alaska and Canada, the continental shelf is a shallow water habitat that contains plenty of fish for the bears’ favorite prey, seals.

During the early summer when seals are weaning their pups and most vulnerable to attack, polar bears will often double their body weight from eating the fatty meat.

The researchers’ data shows that as the sea ice over the continental shelf continues to recede earlier and further; the bears are being displaced from this primary foraging habitat and traveling further north into deeper waters where there are fewer seals to prey on.

“The combined impact of having to move farther and farther north with the ice in the summer and then having to move back in the fall and winter as the ice freezes is taking a major toll,” Pagano said. “Our work highlights the worrying impact of sea ice decline on polar bear movement patterns.”

Another interesting finding of the study is that around 20% of the polar bear population in the Beaufort Sea is foregoing their traditional sea ice hunting grounds altogether in the summer and fall. These bears are moving inland along the Alaskan and Canadian coast looking for food such as carrion, berries and sometimes even bowhead whale carcasses that are left on the shore by indigenous residents that hunt the large aquatic mammals.

“Sometimes you’ll have 50 to 100 polar bears that congregate around these whale carcasses and compete with each other for food,” Pagano said. “As more and more bears move on land, I suspect there’ll be a lot more competition for these food resources and we’ll probably start seeing further decreases in abundance and survival.”

Moving forward, Pagano and his colleagues with the U.S Geological Survey plan to conduct further studies of the polar bears moving inland to get a better idea of how they are coping with their new terrestrial habitat.

He said the best thing humans can do to help preserve the southern Beaufort Sea’s 800 or so remaining polar bears is to focus on curbing global carbon emissions which are the main cause behind receding arctic sea ice.

Recent modeling work has shown that if regulations are enacted to reduce these emissions to avoid global warming greater than 2°C or 3.6°F then it could drastically slow the decline of polar bear habitat in the arctic which would in turn help these animals to survive.

“Coming across a polar bear while flying over the arctic in a helicopter is a surreal experience,” Pagano said. “They are incredibly massive and impressive. It is amazing to observe this animal that is so uniquely adapted to exist in this harsh arctic environment. They are worth the effort it will take to preserve them.”

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Materials provided by Washington State University. Original written by Will Ferguson. Note: Content may be edited for style and length.

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First optical oscilloscope

A team from UCF has developed the world’s first optical oscilloscope, an instrument that is able to measure the electric field of light. The device converts light oscillations into electrical signals, much like hospital monitorsconvert a patient’s heartbeat into electrical oscillation.

Until now, reading the electric field of light has been a challenge because of the high speeds at which light waves oscillates. The most advanced techniques, which power our phone and internet communications, can currently clock electric fields at up to gigahertz frequencies — covering the radio frequency and microwave regions of the electromagnetic spectrum. Light waves oscillate at much higher rates, allowing a higher density of information to be transmitted. However, the current tools for measuring light fields could resolve only an average signal associated with a ‘pulse’ of light, and not the peaks and valleys within the pulse. Measuring those peaks and valleys within a single pulse is important because it is in that space that information can be packed and delivered.

“Fiber optic communications have taken advantage of light to make things faster, but we are still functionally limited by the speed of the oscilloscope,” says Physics Associate Professor Michael Chini, who worked on the research at UCF. “Our optical oscilloscope may be able to increase that speed by a factor of about 10,000.”

The team’s findings are published in this week’s Nature Photonics journal.

The team developed the device and demonstrated its capability for real-time measurement of the electric fields of individual laser pulses in Chini’s lab at UCF. The next step for the team is to see how far they can push the speed limits of the technique.

The lead author of the paper is UCF postdoctoral scholar Yangyang Liu. Other authors include physics alums Jonathan Nesper ’19 ’21MS, who earned his bachelor’s in math and master’s in physics; Shima Gholam-Mirzaei ’18MS ’20PhD; and John E. Beetar ’15 ’17MS ’20PhD.

Gholam-Mirzaei is now a postdoctoral researcher at the Joint Attosecond Science Laboratory at the National Research Council of Canada and University of Ottawa and Beetar is completing a postdoc at the University of California at Berkeley.

Chini had the idea for the single-shot waveform measurement scheme and oversaw the research team. Liu led the experimental effort and performed most of the measurements and simulations. Beetar assisted with the measurements of the carrier-envelope phase dependence. Nesper and Gholam-Mirzaei assisted with the construction of the experimental setup and with the data collection. All authors contributed to the data analysis and wrote the journal article.

The work was supported primarily through a grant from the Air Force Office of Scientific Research under Award No. FA9550-20-1-0284, while Gholam-Mirzaei was supported by the Army Research Office under Award No. W911NF-19-1-0211.

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Materials provided by University of Central Florida. Original written by Zenaida Gonzalez Kotala. Note: Content may be edited for style and length.

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Decreased vehicle emissions linked with significant drop in deaths attributable to air pollution

Decreasing vehicle emissions since 2008 have reduced by thousands the number of deaths attributable to air pollution, yielding billions of dollars in benefits to society, according to a new study led by researchers at Harvard T.H. Chan School of Public Health.

The study also found that although the public health burden of large trucks has been greatly reduced, passenger light-duty vehicles, such as SUVs and pickup trucks, continue to contribute a significant amount of air pollution in major metropolitan areas.

The study will be published online on December 13, 2021 in the journal PNAS.

“Recent reductions in vehicle emissions have yielded major health benefits, even though only small progress has been made on reducing their climate impact,” said first author Ernani Choma, a research fellow in Harvard Chan School’s Department of Environmental Health. “Our results indicate that to achieve further public health and climate gains, even more stringent policies will be required.”

Although the health and climate burden of vehicle emissions in the U.S. has been widely studied, the benefits of recent reductions in vehicle emissions — spurred by federal air pollution regulations and technological innovations by car manufacturers — were not well known. The new study provides estimates that compare the actual health and climate impact of reduced vehicle emissions with what that impact would have been had emissions not been reduced. Researchers calculated the so-called “social benefits” attributable to decreasing emissions — in this case, the monetary value to society of the reduction in deaths attributable to air pollution and climate impacts avoided.

Using recent national emissions data, the researchers modeled four scenarios for emissions in 2017: actual emissions as well as three alternative scenarios in which county-level emissions were the same as they were in 2014, 2011, and 2008. Each of the scenarios factored in the types of vehicles being driven and how many miles they traveled, detailed data about air pollution levels across the U.S., mortality rates, and trends in demographics — including an aging population that is becoming more susceptible to air pollution over time.

The researchers estimated that reductions in emissions yielded $270 billion in social benefits in the U.S. in 2017 — mostly due to the estimated value of reduced mortality risk from fine particulate matter (PM2.5) air pollution — and, to a lesser degree, to reduced “social costs” from greenhouse gas emissions, which are calculated from a range of factors such as human health impacts, changes in agricultural productivity, natural disasters, risk of conflict, and more.

The researchers also estimated that deaths attributable to air pollution due to vehicle emissions dropped from 27,700 in 2008 to 19,800 in 2017. The decrease in deaths was not as large as researchers expected, because many factors offset the progress in reducing emissions, such as a larger and aging population, larger vehicles replacing smaller ones, and more miles traveled per vehicle. On the other hand, the authors noted, if vehicles were still emitting at 2008 levels, those emissions would have caused 48,200 deaths attributable to air pollution in 2017 — which would have represented a 74% increase between 2008 and 2017.

The study found significant recent progress in reducing emissions from heavy-duty trucks, but less progress with passenger light-duty vehicles, including cars, SUVs, and pickup trucks. Passenger light-duty vehicles accounted for two-thirds of the public health burden from transportation-related air pollution in 2017, the authors said. They noted that emissions from these vehicles in large metropolitan areas are so harmful that they are responsible for 30% more attributable deaths than all heavy-duty trucks across the nation.

“If the trends of increased population density with an aging population, and a shift to larger passenger vehicles continue, emissions, especially in urban areas, will continue to become more harmful and it will be harder to achieve further public health gains by small incremental improvements in new vehicles,” said John Spengler, Akira Yamaguchi Professor of Environmental Health and Human Habitation and senior author of the study. “Our study findings strengthen the case for policies at the municipal level that encourage electric vehicles while discouraging conventional gasoline vehicles and for making our cities more accessible for non-motorized transportation such as biking or walking.”

Other Harvard Chan School co-authors of the study included John Evans, Joel Schwartz, and James Hammitt.

Funding for the study was provided by Harvard University, from which Choma received financial support during his doctoral program.

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Life arose on hydrogen energy, researchers suggest

How did the first chemical reactions get started at the origin of life and what was their source of energy? Researchers at the Heinrich Heine University Düsseldorf (HHU) have reconstructed the metabolism of the last universal common ancestor, LUCA. They found that almost all chemical steps used by primordial life to piece together the molecular building blocks of cells are energy releasing reactions. This identified the long-sought source of energy needed to drive these reactions forward, which has been hiding in plain sight. The energy required to synthesize the building blocks of life comes from within metabolism itself, as long as one essential starting compound is included. The secret ingredient that releases the energy from within at life’s origin is the cleanest, greenest, newest and oldest of all energy carriers: Hydrogen gas, H2.

The team of Prof. Dr. William Martin in the Institute for Molecular Evolution at the HHU investigates how and where life arose on the early Earth. Their approach is experimental and computational. In the laboratory, they run chemical experiments to investigate reactions between hydrogen and carbon dioxide, CO2, using catalysts and conditions found in submarine hydrothermal vents. At the computer, they have developed a form of molecular archaeology that allows them to uncover the many different traces of primordial life that are preserved in the proteins, DNA and chemical reactions of modern cells.

In their latest work, they investigated the question of what kind of chemical environment fostered the chemical reactions that gave rise to metabolism, and later to LUCA itself, and where the energy came from that was needed to drive those reactions forward. To do that, they looked not at genes, but at the information contained within the chemical reactions of life themselves. They identified 402 metabolic reactions that have gone virtually unchanged since the origin of life roughly 4 billion years ago. Because these reactions are common to all cells, they were also present in LUCA. They shed light on how primordial life dealt with energy in metabolism and where it obtained the energy needed to make life’s chemical reactions go forward.

Jessica Wimmer, a PhD student in the institute and lead author on the new paper, was particularly interested in the energy balance of LUCA’s metabolic reactions, because all life requires energy. For that she made a catalogue of the 402 reactions that the simple and ancient among modern cells — bacteria and archaea — use to construct the building blocks of life: the 20 amino acids, the bases of DNA and RNA, and the 18 vitamins (cofactors) that are essential for metabolism. In the most primitive of modern cells, and in Wimmer’s computer analyses, these compounds are synthesized from simple molecules that are present in the modern environment and that were also present in hydrothermal vents on the early Earth: hydrogen (H2), carbon dioxide (CO2) and ammonia (NH3). The result was the metabolic network of LUCA.

When asked about the motivation behind the central question of the new study, Jessica Wimmer says: “We wanted to know where the energy came from that drove primordial metabolism forward. At the very onset of metabolic reactions some 4 billion years ago, there were no proteins or enzymes to catalyze reactions because they had not yet evolved. Metabolism had to arise from reactions that could take place in the environment, perhaps with help from inorganic catalysts. But catalysts or not, in order to go forward, the reactions have to release energy. Where did that energy come from? There have been lots of suggestions for possible sources of metabolic energy in the literature. But nobody ever looked into the reactions of metabolism itself.” To find sources of energy in metabolic reactions, the team calculated the amount of free energy, also called Gibbs energy, that is released or consumed in each reaction.

The result: LUCA’s metabolism required no external source of energy such as UV light, meteorite impacts, volcanic eruptions, or radioactivity. On the contrary, in an environment typical of many modern submarine hydrothermal vents, the energy needed for the reactions of metabolism to go forward stems from within metabolism itself. Stated another way, almost all of LUCA’s metabolic reactions liberate energy all by themselves: the energy for life stems from life itself. Martin, senior author of the study, says: “That is exciting, because the 400 interconnected reactions of central metabolism, which seem so hopelessly complex upon first encounter, suddenly reveal a natural tendency to unfold all by themselves under the right conditions.”

To arrive at that conclusion, the team had to first investigate the energetics of the 402 reactions using computer programs that simulate different environmental conditions, so as to distinguish energetically favorable from unfavorable combinations. This is important because whether or not a reaction releases energy often depends upon environmental conditions. They surveyed conditions ranging from pH 1 (acidic) to pH 14 (alkaline), temperatures from 25 to 100 °C, and different relative amounts of reactants to products. They looked with particular care at the energetic role of hydrogen. Wimmer: “Without hydrogen, nothing happens at all, because hydrogen is required to get carbon from CO2 incorporated into metabolism in the first place.”

The energetically optimal conditions fall within an alkaline pH range around pH 9 and a temperature around 80 °C, with hydrogen required for CO2 fixation. Putting this result in context, Martin explains: “This is almost exactly what we see at Lost City, a H2-producing hydrothermal field in the Mid-Atlantic. In an environment like that, about 95-97 % of LUCA’s metabolic reactions could go forward spontaneously, that is, without the need for any other source of energy. In the abyssal darkness of hydrothermal systems, H2 is chemical sunlight. Modern energy research exploits exactly the same properties of hydrogen as life does. It is just that life has four billion years of experience with hydrogen technology, while we are just getting started.”

Jessica Wimmer adds: “Regarding energy at life’s origin, we can say that pure chemical energy is sufficient. We need no sunlight, no meteorites, no UV light: just H2 and CO2, plus some ammonia and salts. Because of the extremely conserved nature of the chemical reactions in our biosynthetic network, we can obtain some interesting insights into the reactions that gave rise to LUCA, even though it lived four billion years ago.”

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A missing genetic switch at the origin of malformations

Embryonic development follows delicate stages: for everything to go well, many genes must coordinate their activity according to a very meticulous scheme and tempo. This precision mechanism sometimes fails, leading to more or less disabling malformations. By studying the Pitx1 gene, one of the genes involved in the construction of the lower limbs, a team from the University of Geneva (UNIGE), in Switzerland, has discovered how a small disturbance in the activation process of this gene is at the origin of clubfoot, a common foot malformation. Indeed, even a fully functional gene cannot act properly without one of its genetic switches. These short DNA sequences provide the signal for the transcription of DNA into RNA, and are essential for this mechanism. And when just one of these switches is missing, the proportion of cells where the gene is active decreases, preventing the lower limbs from being built properly. These results, that can be read in the journal Nature Communications, highlight the hitherto largely underestimated role of genetic switches in developmental disorders.

During embryonic development, hundreds of genes must be precisely activated or repressed for organs to build properly. This control of activity is directed by short DNA sequences that, by binding certain proteins in the cell nucleus, act as true ON/OFF switches. “When the switch is turned on, it initiates the transcription of a gene into RNA, which in turn is translated into a protein that can then perform a specific task,” explains Guillaume Andrey, professor in the Department of Genetic and Developmental Medicine at the UNIGE Faculty of Medicine, who led this research. “Without this, genes would be continuously switched on or off, and therefore unable to act selectively, in the right place and at the right time.” In general, each gene has several switches to ensure that the mechanism is robust. “However, could the loss of one of these switches have consequences? This is what we wanted to test here by taking as a model the Pitx1 gene, whose role in the construction of the lower limbs is well known,” says Raquel Rouco, a post-doctoral researcher in Guillaume Andrey’s laboratory and co-first author of this study.

A decrease in cellular activation that leads to clubfoot

To do this, the scientists modified mouse stem cells using the genetic engineering tool CRISPR-CAS 9, which makes it possible to add or remove specific elements of the genome. “Here, we removed one of Pitx1’s switches, called Pen, and added a fluorescence marker that allows us to visualise the gene activation,” explains Olimpia Bompadre, a doctoral student in the research team and co-first author. “These modified cells are then aggregated with mouse embryonic cells for us to study their early stages of development.”

Usually, about 90% of cells in future legs activate the Pitx1 gene, while 10% of cells do not. “However, when we removed the Pen switch, we found that the proportion of cells that did not activate Pitx1 rose from 10 to 20%, which was enough to modify the construction of the musculoskeletal system and to induce a clubfoot,” explains Guillaume Andrey. Indeed, the proportion of inactive cells increased particularly in the immature cells of the lower limbs and in the irregular connective tissue, a tissue that is essential for building the musculoskeletal system.

The same mechanism in many genes

Beyond the Pitx1 gene and clubfoot, the UNIGE scientists have discovered a general principle whose mechanism could be found in a large number of genes. Flawed genetic switches could thus be at the origin of numerous malformations or developmental diseases. Moreover, a gene does not control the development of a single organ in the body, but is usually involved in the construction of a wide range of organs. “A non-lethal malformation, such as clubfoot for example, could be an indicator of disorders elsewhere in the body that, while not immediately visible, could be much more dangerous. If we can accurately interpret the action of each mutation, we could not only read the information in the genome to find the root cause of a malformation, but also predict effects in other organs, which would silently develop, in order to intervene as early as possible,” the authors conclude.

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Materials provided by Université de Genève. Note: Content may be edited for style and length.

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