Genome sequencing accelerates cancer detection

Esophageal cancer is the eighth most common cancer worldwide. It often develops from a condition called Barrett’s esophagus. Existing monitoring and treatment methods are very intrusive, and many patients have to undergo burdensome procedures to ensure that no cancer is missed.

Researchers have now developed a statistical model that uses genomic data to accurately predict whether a patient with Barrett’s esophagus has a high or low risk of developing cancer.

Genomics and statistics come together

Researchers at the University of Cambridge, EMBL’s European Bioinformatics Institute (EMBL-EBI), and collaborators sequenced genomes from biopsies routinely collected from patients with Barrett’s esophagus. These patients are monitored for early signs of esophageal cancer. The researchers used the data to look for differences between patients who were ultimately diagnosed with cancer and those who were not. The data were used to develop a statistical model measuring each patient’s individual risk. The research was published in Nature Medicine.

Other recent cancer studies have shown that genomic mutations leading to cancer may occur many years before a patient is diagnosed with the disease. Being able to identify these mutations could provide a new route to early diagnosis and treatment.

Using genomic data from 88 patients with Barrett’s esophagus, the researchers identified half of the patients who were diagnosed with esophageal cancer as ‘high risk’ more than eight years before diagnosis. The numbers went up to 70% two years before diagnosis. Equally important, the model also accurately predicted patients who were at a very low risk of developing cancer.

“One of the unique things about this study was the richness of the data provided by colleagues at Addenbrooke’s Hospital in Cambridge,” explains Moritz Gerstung, Group Leader at EMBL-EBI. “These patients have been in surveillance for over 15 years, so overall we had over 800 samples, taken over time and from different areas of the esophagus. This allowed us to measure in great detail what type of genomic changes occur and how these trajectories differ between patients with and without cancer. Without such thorough surveillance programmes, this study wouldn’t have been possible.”

The benefit of early detection

Although people with Barrett’s esophagus are at considerably higher risk of developing esophageal cancer than the general population, only 1 patient in 300 will be diagnosed with cancer per year. Nevertheless, they all have to go through intrusive monitoring procedures every two years. This surveillance can be uncomfortable, stressful, and time-consuming for the patients, and it places an additional burden on the healthcare system.

“The benefit of our method is twofold,” explains Sarah Killcoyne, Visiting Postdoctoral Fellow at EMBL-EBI. “The patients who have high-risk Barrett’s, which is likely to become cancerous, can receive treatment earlier. And individuals who have something that looks genetically stable, and unlikely to develop into the disease, do not need to undergo such intense surveillance. The hope is that our method can help improve early detection and treatment, and decrease unnecessary treatment for low-risk patients, without compromising patient safety.”

These results mean that patients at greatest risk can be treated immediately, rather than conducting repeated biopsies until early signs of cancer are found. Conversely, patients with low risk and stable disease can be monitored less frequently. Overall, the authors estimate that monitoring can be reduced for 50% of patients with Barrett’s esophagus.

“This is an exciting example of how a collaboration between computational biologists and clinician scientists can bring new insights into an important clinical problem,” says Rebecca Fitzgerald, Professor of Cancer Prevention and MRC Programme Leader at the University of Cambridge. “Esophageal cancer is devastating when it is diagnosed late, but early intervention can be performed endoscopically and spare patients unnecessary chemotherapy and removal of their esophagus. Similar approaches could be extended to other cancer types in the future.”

According to the authors, the next steps are to refine the method, ideally by analysing data from more patients. It is also important to bring in clinical information and improve the model’s accuracy. Eventually, this will lead to clinical trials to show that this model is useful in clinical practice for patients currently in surveillance.

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‘Wild West’ mentality lingers in modern populations of US mountain regions

When historian Frederick Jackson Turner presented his famous thesis on the US frontier in 1893, he described the “coarseness and strength combined with acuteness and acquisitiveness” it had forged in the American character.

Now, well into the 21st century, researchers led by the University of Cambridge have detected remnants of the pioneer personality in US populations of once inhospitable mountainous territory, particularly in the Midwest.

A team of scientists algorithmically investigated how landscape shapes psychology. They analysed links between the anonymised results of an online personality test completed by over 3.3 million Americans, and the “topography” of 37,227 US postal — or ZIP — codes.

The researchers found that living at both a higher altitude and an elevation relative to the surrounding region — indicating “hilliness” — is associated with a distinct blend of personality traits that fits with “frontier settlement theory.”

“The harsh and remote environment of mountainous frontier regions historically attracted nonconformist settlers strongly motivated by a sense of freedom,” said researcher Friedrich Götz, from Cambridge’s Department of Psychology.

“Such rugged terrain likely favoured those who closely guarded their resources and distrusted strangers, as well as those who engaged in risky explorations to secure food and territory.”

“These traits may have distilled over time into an individualism characterised by toughness and self-reliance that lies at the heart of the American frontier ethos” said Götz, lead author of the study.

“When we look at personality across the whole United States, we find that mountainous residents are more likely to have psychological characteristics indicative of this frontier mentality.”

Götz worked with colleagues from the Karl Landsteiner University of Health Sciences, Austria, the University of Texas, US, the University of Melbourne in Australia, and his Cambridge supervisor Dr Jason Rentfrow. The findings are published in the journal Nature Human Behaviour.

The research uses the “Big Five” personality model, standard in social psychology, with simple online tests providing high-to-low scores for five fundamental personality traits of millions of Americans.

The mix of characteristics uncovered by study’s authors consists of low levels of “agreeableness,” suggesting mountainous residents are less trusting and forgiving — traits that benefit “territorial, self-focused survival strategies.”

Low levels of “extraversion” reflect the introverted self-reliance required to thrive in secluded areas, and a low level of “conscientiousness” lends itself to rebelliousness and indifference to rules, say researchers.

“Neuroticism” is also lower, suggesting an emotional stability and assertiveness suited to frontier living. However, “openness to experience” is much higher, and the most pronounced personality trait in mountain dwellers.

“Openness is a strong predictor of residential mobility,” said Götz. “A willingness to move your life in pursuit of goals such as economic affluence and personal freedom drove many original North American frontier settlers.”

“Taken together, this psychological fingerprint for mountainous areas may be an echo of the personality types that sought new lives in unknown territories.”

The researchers wanted to distinguish between the direct effects of physical environment and the “sociocultural influence” of growing up where frontier values and identities still hold sway.

To do this, they looked at whether mountainous personality patterns applied to people born and raised in these regions that had since moved away.

The findings suggest some “initial enculturation” say researchers, as those who left their early mountain home are still consistently less agreeable, conscientious and extravert, although no such effects were observed for neuroticism and openness.

The scientists also divided the country at the edge of St. Louis — “gateway to the West” — to see if there is a personality difference between those in mountains that made up the historic frontier, such as the Rockies, and eastern ranges e.g. the Appalachians.

While mountains continue to be a “meaningful predictor” of personality type on both sides of this divide, key differences emerged. Those in the east are more agreeable and outgoing, while western ranges are a closer fit for frontier settlement theory.

In fact, the mountainous effect on high levels of “openness to experience” is ten times as strong in residents of the old western frontier as in those of the eastern ranges.

The findings suggest that, while ecological effects are important, it is the lingering sociocultural effects — the stories, attitudes and education — in the former “Wild West” that are most powerful in shaping mountainous personality, according to scientists.

They describe the effect of mountain areas on personality as “small but robust,” but argue that complex psychological phenomena are influenced by many hundreds of factors, so small effects are to be expected.

“Small effects can make a big difference at scale,” said Götz. “An increase of one standard deviation in mountainousness is associated with a change of around 1% in personality.”

“Over hundreds of thousands of people, such an increase would translate into highly consequential political, economic, social and health outcomes.”

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Health24.com | Need another reason not to vape? Your oral health is at risk

  • There is now a solid amount of evidence showing a link between e-cigarettes and poor oral health
  • A recent study shows that close to 50% of people using e-cigarettes had gum disease and oral infections
  • Vapers are risking from inflammation and tooth cavities to periodontitis and oral cancer

The warnings about vaping – inhaling the vapour of electronic cigarettes – tend to focus on the potential dangers to the heart and lungs.

But an increasing amount of research shows the chemicals in e-cigarettes start to inflict damage right where they enter the body: your mouth.

Because e-cigarettes are a recent phenomenon, said Dr Crystal Stinson, assistant professor at Texas A&M College of Dentistry in Dallas, “Studies on their impact are really new. But now we have a solid amount of evidence that shows the link between e-cigarettes and poor oral health.”

Nicotine, whether smoked or vaped, restricts blood flow to the gums, which can contribute to periodontal disease. The fluid in e-cigarettes, which can include propylene glycol, benzene, formaldehyde and other chemicals, only increases the risks.

Irreversible issues

A study published earlier this year in the journal iScience showed that 43% of people using e-cigarettes had gum disease and oral infections. That figure was higher among smokers – 73% – but only 28% among people who neither smoked nor vaped.

“The oral cavity is really resilient tissue that heals faster than other parts of the body,” Stinson said. “But we also know that when you repeatedly traumatise it, that’s when you end up having issues that are irreversible.”

Those issues, she added, range from inflammation and tooth cavities to loss of bone that anchors teeth to the jaw, called periodontitis, and oral cancer.

Another study published in May in Science Advances concluded the oral microbiome – the vast collection of friendly bacteria, viruses and other microbes that live in the mouth – of e-cigarette users without gum disease looked a lot like the microbiome of people with periodontitis.

“It’s absolutely scary stuff,” said Dr Purnima Kumar, professor at the Ohio State University College of Dentistry and the study’s senior author. “E-cigarettes stress the bacterial communities that live in your mouth, and they encase themselves in slime. So they’re no longer good bacteria and the inflammatory response is through the roof. People are walking around thinking they’re healthy, but they are just primed for disease.”

‘We’ve just scratched the surface’

Oral health is a critical element of whole-body health. Two preliminary studies presented in February at the American Stroke Association’s International Stroke Conference linked gum disease with a higher rate of strokes caused by hardening of large arteries in the brain and also with severe artery blockages. A 2018 study in the American Heart Association journal Hypertension found that gum disease appears to worsen high blood pressure and interferes with medications to treat hypertension.

Last December, the American Dental Association issued a statement urging a ban on e-cigarettes not approved by the Food and Drug Administration to help people quit smoking, as well as more research on the effects of vaping on oral health.

“We’ve just scratched the surface,” Kumar said. “We know it’s detrimental. We need to start looking at which chemical components of vape really cause this, why does it cause this, how long does it take to start, and how long does the body need to recover once you quit.”

Not enough time has passed since vaping became popular to assess the long-term dangers, Stinson said. “Unfortunately, everybody’s an experiment right now.”

But Stinson doesn’t need to wait for more studies to be convinced of the dangers of vaping. One look inside a vaper’s mouth usually tells the story.

More cavities

“Periodontal disease is normally an adult disease, and we’re seeing it in younger people,” she said. “Younger people normally have more saliva than they need, so when they present with dry mouth, periodontal disease or increased complaints of mouth ulcers, our next question is, ‘Do you vape?’ These symptoms are all tied to components in e-cigarettes.”

She also notices more cavities in her younger patients who vape, which she believes may be due to the acidity of the components in vape liquid and an increase in cavity-causing bacteria.

Stinson attributes the high rate of nicotine dependence to the sweet flavourings that helped attract adolescents to e-cigarettes. In February, the FDA banned many flavoured e-cigarettes in hopes of reducing the rise in vaping among young people, but health experts fear many are already hooked on nicotine.

“Phasing out the flavours is going to help, but we still have a population that is struggling to let go of the habit,” she said.

Both Stinson and Kumar are involved in education and cessation programmes aimed at convincing young people not to start vaping and helping those who do to stop.

‘It’s not a vapour’

The first lesson: Don’t be fooled into thinking that what looks like steam is a safe alternative to cigarette smoke.

“You hear ‘vapour’ and you think steam facials or a tea kettle,” Kumar said. “It’s not a vapour. It’s an aerosol, like hairspray or what you use to kill ants and cockroaches. When I teach young kids, I take little cans of hairspray and say, ‘I want you to spray this in your mouth.’

“They say, ‘Ew, no.’ So, I say, ‘Then why would you vape?'”

Image credit: Shutterstock

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Health24.com | Owners remain faithful to flat-faced dogs despite health woes

  • Flat-faced dogs face more health risks than dogs with longer muzzles
  • Some veterinarians think these dogs should no longer be bred
  • Flat-faced dogs are, however, very loving and extremely popular

In spite of serious health problems, flat-faced pooches such as bulldogs, French bulldogs and pugs win the hearts of their owners, a new study finds.

Respiratory disease, breathing issues, eye disease, spinal disease, heat stroke and pneumonia are among the severe disorders that afflict these dogs. And they live an average of four fewer years than dogs with longer muzzles.

Some veterinarians consider the health of flat-faced (brachycephalic) dogs too compromised to continue their breeding, the British researchers noted in the study, published in August in PLOS ONE.

And owners of pets with chronic illnesses report greater mental distress and a lower quality of life.

Loving personalities

Even so, the popularity of flat-faced dogs has soared in the past decade, which suggests they’ll continue to be bred despite their significant health risks.

“Although dog breed popularity often follows a boom and bust pattern, our results are of real concern as they indicate that this ‘brachy boom’ is here to stay,” study co-author Rowena Packer, of Royal Veterinary College in London, and colleagues said.

“Owners are becoming hooked on the loving personalities of these sweet dogs, but also accepting and normalising their shocking health issues,” the researchers said in a journal news release.

To learn more about people’s loyalty to Frenchies, pugs and bulldogs, researchers surveyed nearly 2 200 owners of flat-faced dogs. They found that 93% said they’d own their current breed in the future, and two-thirds said they’d recommend their current breed to someone thinking about getting a dog for the first time.

Good companion dogs

The chances that a current owner would get another dog of the same breed or recommend the breed to someone else was higher among first-time owners and those who had a strong bond with their dog. It was lower among those whose dog had a high number of health problems or behavioural issues.

Owners recommended their breed because their behaviour makes them good companion dogs, they’re suitable for an inactive life with limited space, and they’re good for homes with children.

Some owners recommended against their breed due to a high rate of health problems, the expense, ethical and welfare concerns, bad behaviour, and impact on the owner’s lifestyle.

The findings could be used to educate people about the problems associated with “brachy” breeds in order to control their popularity in the long-term, the researchers suggested.

Image credit: Shutterstock

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Health24.com | ADHD may help predict adults’ car crash risk

  • ADHD is associated with riskier behaviour on the road
  • Young adults with continuing ADHD since childhood are more likely to be involved in road accidents
  • However, in those whose ADHD symptoms are under control, there is no higher risk of road crashes 

Young adults who’ve had attention-deficit/hyperactivity disorder (ADHD) since childhood are at increased risk for road crashes, researchers say.

But there is no increased risk for those whose ADHD symptoms have decreased, according to the study published online recently in the Journal of the American Academy of Child and Adolescent Psychiatry.

Other health conditions

For the study, the researchers analysed data from 441 children with ADHD and 231 children without ADHD. They were followed from age seven to 25 as part of a study that involved six centres in the United States and one in Canada.

The investigators looked at participants’ ADHD symptoms and driving records, as well as other health conditions. The other conditions included oppositional defiant disorder, conduct disorder, antisocial personality disorder, and substance use during childhood and into adulthood.

Young adults with and without a history of ADHD got driving licenses at similar ages and at similar rates, the findings showed.

Compared with people with no history of ADHD, the rate of car crashes was 1.45 times higher for adults who had a history of childhood ADHD, and 1.81 times higher for those with continuing symptoms.

Functioning in other domains

However, crash rates were the same among adults who never had ADHD and those whose ADHD symptoms remitted.

“Extant research shows that ADHD is associated with more traffic violations, speeding violations, licence suspensions and risky driving behaviours,” said study lead author Arunima Roy, a postdoctoral fellow at the University of Ottawa in Ontario, Canada.

Roy noted in a journal news release that the likelihood of risky driving increases when childhood ADHD persists into adulthood.

“Prior research from our group as well as by others also shows that, aside from driving behaviours, a persistence of ADHD into adulthood can impair functioning in other domains,” Roy said. “These domains can include occupational performance, educational attainment, emotional functioning, substance use and justice involvement.”

Image credit: iStock 

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Health24.com | Study zeroes in on how Zika virus is passed from mom to foetus

  • The placenta normally protects the foetus from viral infections
  • However, a study found that the Zika virus can get into the placenta
  • Zika can also cause a persistent infection in the placenta

New insight into how pregnant women can pass the Zika virus to their foetus could point to ways to prevent it, researchers say.

Babies infected with Zika in the womb can have abnormally small heads (microcephaly) and other birth defects.

In this study, researchers examined placenta samples collected from pregnant women during the peak of Brazil’s 2015 to 2016 Zika outbreak. Samples came from five women who weren’t infected and 10 who were, including five whose babies had microcephaly and five whose babies did not.

One function of the placenta is to protect the foetus from viral infections, and it’s typically very effective at doing so.

Strong inflammation

But this study found that Zika can get into the placenta, increasing odds that the virus will reach the foetus.

Also, Zika can create a persistent infection in the placenta. It can trigger strong inflammation that can last for months after initial infection, and cause tissue and vascular changes that can affect foetal development.

The study was published in the journal Frontiers in Immunology.

Lead author Kíssila Rabelo, a researcher at Rio de Janeiro State University, said her team saw Zika spread rapidly in Brazil and the resulting situation for pregnant women across the country.

‘Countless developments’

“It was really impactful and made us question how the scientific community could know so little about this disease,” she said in a journal news release. “So as a research group that already works with arboviruses, we dedicated ourselves to understanding the pathogenesis of this disease.”

Rabelo said the findings should be “useful for scientists to establish an infection profile and further understand the immune response caused by the Zika virus”.

The research “could generate countless developments, from a basis for the detection of plasma biomarkers to the development of drugs and vaccines,” Rabelo said, adding that these are keys to controlling future outbreaks that epidemiologists predict are likely.

Eighty-six countries have reported Zika virus, a disease that is primarily caused by a virus transmitted by mosquitoes, with large outbreaks reported in Brazil and several others.

Image credit: iStock

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Health24.com | A guide to managing children’s diabetes during Covid-19

  • Parents are concerned about the effect that Covid-19 may have on diabetic children
  • If a child’s diabetes is under control, there probably isn’t much to worry about
  • High blood sugar, when diabetes is poorly controlled, can, however, increase the risk of infections 

Parents worry that Covid-19 can make a diabetic child’s condition worse, but an expert has some tips for keeping kids healthy during the pandemic.

“If a child has good control of their diabetes, it does not seem as though there will be severe effects if they were to get the virus,” said Dr Michael Yafi, an associate professor of paediatric endocrinology at McGovern Medical School at University of Texas Health Science Center at Houston.

“However, children with poorly controlled diabetes are at a high risk of becoming severely ill if they were to get the virus,” Yafi said in a university news release.

Weakened immune systems

High blood sugar levels can weaken the immune system, making it harder for people with diabetes to fend off infections like Covid-19, he explained.

“The exact cause of severe outcomes in patients with diabetes and Covid-19 is not yet known, but research suggests that people who have diabetes have weakened immune systems, which can impact their ability to quickly heal from an infection or disease,” Yafi said.

He offered these tips to parents to help reduce their child’s risk:

  • Be sure kids wash their hands often.
  • Tell them it’s important to avoid touching their face.
  • Stay away from large gatherings and maintain physical distancing.
  • Clean commonly used areas around the house often.
  • Keep a record of a child’s blood sugar levels.
  • Keep extra emergency diabetes supplies on hand.
  • Practise healthy habits and feed children a healthy diet.
  • Make sure kids get some exercise every day.

Because Covid-19 affects the body in many ways, there are concerns that it may cause patients to develop diabetes, Yafi said. “However, that is still to be determined because we do not have any global epidemiological information about the association between diabetes and previous Covid-19 infection,” he added.

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Covid: Australia hopes to roll out almost 85 million vaccine doses

The government says it has made a deal to produce two Covid-19 vaccines, provided trials are successful.

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Coronavirus: India overtakes Brazil in Covid-19 cases

India, which has been adding record daily totals, now has the world’s second-highest tally.

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